Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11134584 chr5:169009490 A/T 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs111367611 chr5:168964820 C/T 1.46E-8 509 22.37 23.63 6.83 KM Plot
LGG rs11137042 chr8:656730 A/G 3.51E-5 489 24.95 20.5 23.53 KM Plot
LGG rs111450507 chr10:101466270 TA/T 7.72E-5 507 16.4 24.07 21.7 KM Plot
LGG rs111462083 chr14:102171373 G/T 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs111475521 chr14:102172129 T/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs11150038 chr16:78076559 A/G 4.18E-10 498 6.47 25.13 21.6 KM Plot
LGG rs111571149 chr14:24414712 G/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs111575992 chr5:169054335 G/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs11158470 chr14:24423918 C/T 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs111615255 chr5:169011874 T/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs111652247 chr14:24414719 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs111776237 chr14:102172588 C/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs111821272 chr3:190134882 G/A 1.23E-5 503 21.7 28.47 17.9 KM Plot
LGG rs111840825 chr5:169055760 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot